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Welcome to BioTK's documentation!
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Overview
========

BioTK is a Python toolkit, containing a library and scripts, for various
bioinformatics tasks:

- Differential expression analysis on microarray and RNA-seq data
- Functional and downstream analysis of DE gene lists
- Ontology handling 
- Text mining, ranging from shallow NLP to relation extraction
- Efficient storage and querying of sets of genomic intervals 
  (similar to BEDTools, GenomicRanges, etc.)

Tutorial
========

.. toctree::
    :maxdepth: 2

    expression
    meta-analysis

Development information
=======================

.. toctree::
    :maxdepth: 3

    dev
    hacking

Indices and tables
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* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`